For manual backup of server files, I use
FileZilla. Since my server is Linux (RedHat) and my local computer is Windows, I have to make sure that
line endings are preserved by Edit - Settings - Transfers - FTP: File Types,
Default transfer type = Binary. Otherwise I might get double empty lines in my .tpl files. I also preserve the timestamps (creation dates) of my files by selecting Transfer - Preserve timestamps of transferred files:
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